IL_4V8Z_201

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_201 not in the Motif Atlas

Homologous match to IL_5TBW_106

Geometric discrepancy: 0.0513

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V8Z|1|B5|U|2835
4V8Z|1|B5|C|2836
4V8Z|1|B5|A|2837
4V8Z|1|B5|A|2838
4V8Z|1|B5|G|2839
*
4V8Z|1|B5|C|2849
4V8Z|1|B5|G|2850
4V8Z|1|B5|A|2851
4V8Z|1|B5|C|2852
4V8Z|1|B5|A|2853

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BI

60S RIBOSOMAL PROTEIN L10

Chain Bm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

Chain CV

EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2