IL_4V8Z_203

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

4V8Z|1|B5|G|2945, 4V8Z|1|B5|A|2946

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_203 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.054

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V8Z|1|B5|C|2879
4V8Z|1|B5|U|2880
4V8Z|1|B5|C|2881
*
4V8Z|1|B5|G|2943
4V8Z|1|B5|U|2944
4V8Z|1|B5|G|2945
4V8Z|1|B5|A|2946
4V8Z|1|B5|G|2947

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BV

60S RIBOSOMAL PROTEIN L23-A