IL_4V8Z_224

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_224 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.0597

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V8Z|1|B5|U|3300
4V8Z|1|B5|U|3301
4V8Z|1|B5|U|3302
4V8Z|1|B5|G|3303
*
4V8Z|1|B5|C|3311
4V8Z|1|B5|U|3312
4V8Z|1|B5|U|3313
4V8Z|1|B5|A|3314

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BP

60S RIBOSOMAL PROTEIN L17-A

Chain Bd

60S RIBOSOMAL PROTEIN L31-A