IL_4V8Z_228
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_228 not in the Motif Atlas
- Homologous match to IL_5TBW_133
- Geometric discrepancy: 0.0531
- The information below is about IL_5TBW_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.8
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Number of instances in this motif group
- 4
Unit IDs
4V8Z|1|B5|U|3332
4V8Z|1|B5|G|3333
4V8Z|1|B5|U|3334
4V8Z|1|B5|A|3335
4V8Z|1|B5|A|3336
4V8Z|1|B5|G|3337
*
4V8Z|1|B5|C|3367
4V8Z|1|B5|U|3368
4V8Z|1|B5|G|3369
4V8Z|1|B5|A|3370
4V8Z|1|B5|G|3371
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BB
- 60S RIBOSOMAL PROTEIN L3
- Chain BW
- 60S RIBOSOMAL PROTEIN L24-A
Coloring options: