IL_4V8Z_239
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_239 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0396
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
4V8Z|1|B8|A|44
4V8Z|1|B8|C|45
4V8Z|1|B8|G|46
4V8Z|1|B8|C|47
4V8Z|1|B8|A|48
4V8Z|1|B8|G|49
4V8Z|1|B8|C|50
4V8Z|1|B8|G|51
4V8Z|1|B8|A|52
4V8Z|1|B8|A|53
4V8Z|1|B8|A|54
4V8Z|1|B8|U|55
4V8Z|1|B8|G|56
4V8Z|1|B8|C|57
4V8Z|1|B8|G|58
4V8Z|1|B8|A|59
4V8Z|1|B8|U|60
4V8Z|1|B8|A|61
4V8Z|1|B8|C|62
4V8Z|1|B8|G|63
4V8Z|1|B8|U|64
*
4V8Z|1|B8|A|96
4V8Z|1|B8|A|97
4V8Z|1|B8|U|98
4V8Z|1|B8|C|99
4V8Z|1|B8|U|100
Current chains
- Chain B8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BX
- 60S RIBOSOMAL PROTEIN L25
- Chain Bh
- 60S RIBOSOMAL PROTEIN L35-B
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: