IL_4V8Z_261
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 4V8Z|1|B2|G|1228
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_261 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2649
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V8Z|1|B2|A|1224
4V8Z|1|B2|U|1225
4V8Z|1|B2|A|1226
4V8Z|1|B2|A|1227
4V8Z|1|B2|G|1228
4V8Z|1|B2|G|1229
4V8Z|1|B2|A|1230
4V8Z|1|B2|U|1231
4V8Z|1|B2|U|1232
4V8Z|1|B2|G|1233
*
4V8Z|1|B2|C|1252
4V8Z|1|B2|U|1253
4V8Z|1|B2|U|1254
4V8Z|1|B2|G|1255
4V8Z|1|B2|A|1256
4V8Z|1|B2|U|1257
4V8Z|1|B2|U|1258
4V8Z|1|B2|U|1259
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 40S RIBOSOMAL PROTEIN S29-A
- Chain A5
- UBIQUITIN-40S RIBOSOMAL PROTEIN S31
- Chain AK
- 40S RIBOSOMAL PROTEIN S10-A
- Chain AM
- 40S RIBOSOMAL PROTEIN S12
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