IL_4V90_136

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

4V90|1|BA|C|1838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V90_136 not in the Motif Atlas

Homologous match to IL_7A0S_066

Geometric discrepancy: 0.1115

The information below is about IL_7A0S_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V90|1|BA|C|1837
4V90|1|BA|C|1838
4V90|1|BA|G|1839
4V90|1|BA|G|1840
*
4V90|1|BA|C|1902
4V90|1|BA|G|1903

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S RIBOSOMAL PROTEIN L2