IL_4V92_032
3D structure
- PDB id
- 4V92 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 4V92|1|A2|A|579, 4V92|1|A2|U|581, 4V92|1|A2|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V92_032 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1561
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V92|1|A2|G|562
4V92|1|A2|U|563
4V92|1|A2|G|564
4V92|1|A2|C|565
4V92|1|A2|C|566
4V92|1|A2|A|567
4V92|1|A2|G|568
*
4V92|1|A2|C|575
4V92|1|A2|G|576
4V92|1|A2|G|577
4V92|1|A2|U|578
4V92|1|A2|A|579
4V92|1|A2|A|580
4V92|1|A2|U|581
4V92|1|A2|U|582
4V92|1|A2|C|583
Current chains
- Chain A2
- 18S RRNA
Nearby chains
- Chain AZ
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain BD
- US3
- Chain BX
- US12
- Chain Be
- ES30
Coloring options: