IL_4V92_033

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

4V92|1|A2|A|619, 4V92|1|A2|A|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_033 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.2242

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

4V92|1|A2|G|616
4V92|1|A2|U|617
4V92|1|A2|U|618
4V92|1|A2|A|619
4V92|1|A2|A|620
4V92|1|A2|A|621
4V92|1|A2|A|622
*
4V92|1|A2|U|1104
4V92|1|A2|C|1105

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BC

US5

Chain BL

US17

Chain BX

US12