IL_4V92_042

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_042 not in the Motif Atlas

Geometric match to IL_4WZM_001

Geometric discrepancy: 0.2363

The information below is about IL_4WZM_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V92|1|A2|U|825
4V92|1|A2|U|826
4V92|1|A2|C|827
*
4V92|1|A2|G|845
4V92|1|A2|G|846
4V92|1|A2|A|847

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BE

ES4

Chain BL

US17