3D structure

PDB id
4V92 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGUC*GGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V92_045 not in the Motif Atlas
Homologous match to IL_4V88_430
Geometric discrepancy: 0.1698
The information below is about IL_4V88_430
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

4V92|1|A2|G|871
4V92|1|A2|G|872
4V92|1|A2|U|873
4V92|1|A2|C|874
*
4V92|1|A2|G|953
4V92|1|A2|G|954
4V92|1|A2|A|955
4V92|1|A2|C|956

Current chains

Chain A2
18S RRNA

Nearby chains

Chain BN
US15
Chain BW
US8
Chain Bb
ES27

Coloring options:


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