IL_4V92_046

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

4V92|1|A2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_046 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1295

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V92|1|A2|C|874
4V92|1|A2|G|875
4V92|1|A2|G|876
4V92|1|A2|G|877
4V92|1|A2|G|878
*
4V92|1|A2|C|950
4V92|1|A2|A|951
4V92|1|A2|A|952
4V92|1|A2|G|953

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BN

US15

Chain Ba

ES26