IL_4V92_050

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_050 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.2391

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4V92|1|A2|C|990
4V92|1|A2|G|991
4V92|1|A2|A|992
4V92|1|A2|A|993
4V92|1|A2|G|994
*
4V92|1|A2|C|1010
4V92|1|A2|G|1011
4V92|1|A2|U|1012
4V92|1|A2|A|1013
4V92|1|A2|G|1014

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BO

US11

Chain Ba

ES26