IL_4V92_057

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_057 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2417

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V92|1|A2|C|1173
4V92|1|A2|C|1174
4V92|1|A2|U|1175
4V92|1|A2|G|1176
*
4V92|1|A2|C|1463
4V92|1|A2|G|1464
4V92|1|A2|C|1465
4V92|1|A2|G|1466

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BQ

US9

Chain BS

US13

Chain BT

ES19