IL_4V92_126

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

4V92|1|A2|U|313, 4V92|1|A2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_126 not in the Motif Atlas

Homologous match to IL_8P9A_391

Geometric discrepancy: 0.1391

The information below is about IL_8P9A_391

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V92|1|A2|U|311
4V92|1|A2|A|312
4V92|1|A2|U|313
4V92|1|A2|C|314
4V92|1|A2|A|315
4V92|1|A2|A|316
*
4V92|1|A2|U|348
4V92|1|A2|U|349
4V92|1|A2|U|350
4V92|1|A2|C|351
4V92|1|A2|A|352
4V92|1|A2|A|353
4V92|1|A2|C|354
4V92|1|A2|G|355

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BI

ES8

Chain BL

US17

Chain BX

US12