IL_4V95_021

3D structure

PDB id

4V95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YAEJ bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V95|1|AA|A|532, 4V95|1|AA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V95_021 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1551

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V95|1|AA|G|515
4V95|1|AA|U|516
4V95|1|AA|G|517
4V95|1|AA|C|518
4V95|1|AA|C|519
4V95|1|AA|A|520
4V95|1|AA|G|521
*
4V95|1|AA|C|528
4V95|1|AA|G|529
4V95|1|AA|G|530
4V95|1|AA|U|531
4V95|1|AA|A|532
4V95|1|AA|A|533
4V95|1|AA|U|534
4V95|1|AA|A|535
4V95|1|AA|C|536

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AC

30S Ribosomal Protein S3

Chain AL

30S Ribosomal Protein S12

Chain AY

YAEJ