IL_4V97_109

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases (A, C, G, U)

1332G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V97_109 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3816

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4V97|1|BA|G|1319
4V97|1|BA|C|1320
4V97|1|BA|A|1321
4V97|1|BA|A|1322
4V97|1|BA|U|1323
4V97|1|BA|G|1324
*
4V97|1|BA|C|1330
4V97|1|BA|A|1331
4V97|1|BA|G|1332
4V97|1|BA|C|1333

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BW

50S RIBOSOMAL PROTEIN L22