IL_4V9A_010

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4V9A|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_010 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1198

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V9A|1|AA|G|148
4V9A|1|AA|A|149
4V9A|1|AA|C|150
4V9A|1|AA|A|151
4V9A|1|AA|A|152
4V9A|1|AA|C|153
*
4V9A|1|AA|G|168
4V9A|1|AA|C|169
4V9A|1|AA|U|170
4V9A|1|AA|A|171
4V9A|1|AA|A|172
4V9A|1|AA|U|173
4V9A|1|AA|C|174

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

30S RIBOSOMAL PROTEIN S20