IL_4V9A_226

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

4V9A|1|CA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_226 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.2429

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V9A|1|CA|C|1051
4V9A|1|CA|U|1052
4V9A|1|CA|G|1053
4V9A|1|CA|C|1054
4V9A|1|CA|A|1055
4V9A|1|CA|U|1056
*
4V9A|1|CA|A|1204
4V9A|1|CA|U|1205
4V9A|1|CA|G|1206
4V9A|1|CA|G|1207

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CF

30S RIBOSOMAL PROTEIN S3

Chain CM

30S RIBOSOMAL PROTEIN S10

Chain CQ

30S RIBOSOMAL PROTEIN S14