IL_4V9A_240

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V9A|1|CA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_240 not in the Motif Atlas

Geometric match to IL_4ZC7_002

Geometric discrepancy: 0.3129

The information below is about IL_4ZC7_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V9A|1|CA|C|1407
4V9A|1|CA|A|1408
4V9A|1|CA|C|1409
*
4V9A|1|CA|G|1491
4V9A|1|CA|A|1492
4V9A|1|CA|A|1493
4V9A|1|CA|G|1494

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain C1

MRNA

Chain CO

30S RIBOSOMAL PROTEIN S12

Chain DA

Large subunit ribosomal RNA; LSU rRNA