IL_4V9A_246

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAA,UUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_246 not in the Motif Atlas

Geometric match to IL_4M4O_002

Geometric discrepancy: 0.2251

The information below is about IL_4M4O_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9A|1|DA|C|4
4V9A|1|DA|A|5
4V9A|1|DA|A|6
*
4V9A|1|DA|U|2897
4V9A|1|DA|U|2898
4V9A|1|DA|G|2899

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DM

50S ribosomal protein L13