IL_4V9A_392

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

4V9A|1|DA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_392 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.2181

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V9A|1|DA|G|1319
4V9A|1|DA|C|1320
4V9A|1|DA|A|1321
4V9A|1|DA|A|1322
4V9A|1|DA|U|1323
*
4V9A|1|DA|A|1331
4V9A|1|DA|G|1332
4V9A|1|DA|C|1333

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DS

50S ribosomal protein L22

Chain DT

50S ribosomal protein L23