IL_4V9A_397

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUCG*CGGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_397 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3973

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4V9A|1|DA|G|2100
4V9A|1|DA|G|2101
4V9A|1|DA|U|2102
4V9A|1|DA|C|2103
4V9A|1|DA|G|2104
*
4V9A|1|DA|C|2185
4V9A|1|DA|G|2186
4V9A|1|DA|G|2187
4V9A|1|DA|C|2188
4V9A|1|DA|U|2189

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DK

50S ribosomal protein L9