IL_4V9B_206

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V9B|1|CA|A|532, 4V9B|1|CA|U|534, 4V9B|1|CA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_206 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1443

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V9B|1|CA|G|515
4V9B|1|CA|U|516
4V9B|1|CA|G|517
4V9B|1|CA|C|518
4V9B|1|CA|C|519
4V9B|1|CA|A|520
4V9B|1|CA|G|521
*
4V9B|1|CA|C|528
4V9B|1|CA|G|529
4V9B|1|CA|G|530
4V9B|1|CA|U|531
4V9B|1|CA|A|532
4V9B|1|CA|A|533
4V9B|1|CA|U|534
4V9B|1|CA|A|535
4V9B|1|CA|C|536

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CF

30S RIBOSOMAL PROTEIN S3

Chain CG

30S RIBOSOMAL PROTEIN S4

Chain CO

30S RIBOSOMAL PROTEIN S12