IL_4V9C_022

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UCC,GGA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_022 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1515

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V9C|1|AA|U|340
4V9C|1|AA|C|341
4V9C|1|AA|C|342
*
4V9C|1|AA|G|347
4V9C|1|AA|G|348
4V9C|1|AA|A|349

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19

Chain DH

50S ribosomal protein L9