IL_4V9C_051

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_051 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1944

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4V9C|1|AA|A|831
4V9C|1|AA|G|832
4V9C|1|AA|G|833
*
4V9C|1|AA|C|853
4V9C|1|AA|U|854
4V9C|1|AA|U|855

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AR

30S ribosomal protein S18

Chain AU

30S ribosomal protein S21