IL_4V9C_091

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_091 not in the Motif Atlas

Homologous match to IL_4V9K_064

Geometric discrepancy: 0.4093

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V9C|1|AV|U|51
4V9C|1|AV|G|52
4V9C|1|AV|G|53
*
4V9C|1|AV|C|61
4V9C|1|AV|C|62
4V9C|1|AV|G|63

Current chains

Chain AV

Phenylalanine specific transfer RNA, tRNA-Phe

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27