IL_4V9C_217

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_217 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1207

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9C|1|BA|G|2737
4V9C|1|BA|A|2738
4V9C|1|BA|U|2739
4V9C|1|BA|A|2740
4V9C|1|BA|A|2741
4V9C|1|BA|G|2742
*
4V9C|1|BA|C|2762
4V9C|1|BA|G|2763
4V9C|1|BA|A|2764
4V9C|1|BA|A|2765
4V9C|1|BA|A|2766
4V9C|1|BA|C|2767

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L13