IL_4V9C_262

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGU*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_262 not in the Motif Atlas

Geometric match to IL_2H1M_002

Geometric discrepancy: 0.2228

The information below is about IL_2H1M_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4V9C|1|CA|U|591
4V9C|1|CA|G|592
4V9C|1|CA|U|593
*
4V9C|1|CA|G|646
4V9C|1|CA|C|647
4V9C|1|CA|A|648

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CO

30S ribosomal protein S15

Chain CQ

30S ribosomal protein S17