IL_4V9C_263

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_263 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.2616

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V9C|1|CA|U|593
4V9C|1|CA|U|594
4V9C|1|CA|A|595
4V9C|1|CA|A|596
*
4V9C|1|CA|U|644
4V9C|1|CA|G|645
4V9C|1|CA|G|646

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CO

30S ribosomal protein S15

Chain CQ

30S ribosomal protein S17