IL_4V9C_269

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAGAGG*CUGGA

Length

11 nucleotides

Bulged bases

4V9C|1|CA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_269 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.372

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4V9C|1|CA|U|662
4V9C|1|CA|A|663
4V9C|1|CA|G|664
4V9C|1|CA|A|665
4V9C|1|CA|G|666
4V9C|1|CA|G|667
*
4V9C|1|CA|C|739
4V9C|1|CA|U|740
4V9C|1|CA|G|741
4V9C|1|CA|G|742
4V9C|1|CA|A|743

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CF

30S ribosomal protein S6

Chain CO

30S ribosomal protein S15

Chain CR

30S ribosomal protein S18