IL_4V9C_271

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGU,ACG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_271 not in the Motif Atlas

Geometric match to IL_6M6R_001

Geometric discrepancy: 0.243

The information below is about IL_6M6R_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V9C|1|CA|C|770
4V9C|1|CA|G|771
4V9C|1|CA|U|772
*
4V9C|1|CA|A|807
4V9C|1|CA|C|808
4V9C|1|CA|G|809

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CO

30S ribosomal protein S15

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DC

50S ribosomal protein L2