IL_4V9C_336

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_336 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.0798

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V9C|1|DA|U|703
4V9C|1|DA|G|704
4V9C|1|DA|A|705
4V9C|1|DA|A|706
4V9C|1|DA|G|707
*
4V9C|1|DA|U|724
4V9C|1|DA|G|725
4V9C|1|DA|G|726
4V9C|1|DA|A|727
4V9C|1|DA|G|728

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L2