IL_4V9C_338

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4V9C|1|DA|G|776, 4V9C|1|DA|A|788, 4V9C|1|DA|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_338 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0622

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V9C|1|DA|G|775
4V9C|1|DA|G|776
4V9C|1|DA|G|777
*
4V9C|1|DA|C|787
4V9C|1|DA|A|788
4V9C|1|DA|A|789
4V9C|1|DA|U|790
4V9C|1|DA|C|791

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2

Chain DS

50S ribosomal protein L22