IL_4V9C_375

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_375 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.2801

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V9C|1|DA|U|1474
4V9C|1|DA|G|1475
4V9C|1|DA|U|1476
4V9C|1|DA|A|1477
4V9C|1|DA|G|1478
*
4V9C|1|DA|U|1513
4V9C|1|DA|G|1514
4V9C|1|DA|A|1515
4V9C|1|DA|G|1516
4V9C|1|DA|G|1517

Current chains

Chain DA

23S ribosomal RNA

Nearby chains