IL_4V9C_444

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGUC*GUCAA

Length

9 nucleotides

Bulged bases

4V9C|1|AA|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_444 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2427

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V9C|1|AA|U|1060
4V9C|1|AA|G|1061
4V9C|1|AA|U|1062
4V9C|1|AA|C|1063
*
4V9C|1|AA|G|1193
4V9C|1|AA|U|1194
4V9C|1|AA|C|1195
4V9C|1|AA|A|1196
4V9C|1|AA|A|1197

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AE

30S ribosomal protein S5

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14