IL_4V9C_460

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_460 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2884

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V9C|1|BA|C|1526
4V9C|1|BA|G|1527
4V9C|1|BA|A|1528
4V9C|1|BA|G|1529
4V9C|1|BA|G|1530
*
4V9C|1|BA|C|1541
4V9C|1|BA|U|1542
4V9C|1|BA|G|1543
4V9C|1|BA|A|1544
4V9C|1|BA|A|1545
4V9C|1|BA|G|1546

Current chains

Chain BA

23S ribosomal RNA

Nearby chains