IL_4V9C_472

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGGGC*GCCUGA

Length

11 nucleotides

Bulged bases

4V9C|1|CA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_472 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.35

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4V9C|1|CA|U|375
4V9C|1|CA|G|376
4V9C|1|CA|G|377
4V9C|1|CA|G|378
4V9C|1|CA|C|379
*
4V9C|1|CA|G|384
4V9C|1|CA|C|385
4V9C|1|CA|C|386
4V9C|1|CA|U|387
4V9C|1|CA|G|388
4V9C|1|CA|A|389

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20