IL_4V9C_500

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

4V9C|1|AA|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_500 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.2133

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V9C|1|AA|C|1158
4V9C|1|AA|U|1159
4V9C|1|AA|G|1160
4V9C|1|AA|C|1161
*
4V9C|1|AA|G|1175
4V9C|1|AA|A|1176
4V9C|1|AA|G|1177
4V9C|1|AA|G|1178
4V9C|1|AA|A|1179
4V9C|1|AA|A|1180
4V9C|1|AA|G|1181

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AI

30S ribosomal protein S9