IL_4V9C_522

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V9C|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_522 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1534

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V9C|1|AA|G|147
4V9C|1|AA|G|148
4V9C|1|AA|A|149
4V9C|1|AA|U|150
4V9C|1|AA|A|151
4V9C|1|AA|A|152
4V9C|1|AA|C|153
*
4V9C|1|AA|G|168
4V9C|1|AA|C|169
4V9C|1|AA|U|170
4V9C|1|AA|A|171
4V9C|1|AA|A|172
4V9C|1|AA|U|173
4V9C|1|AA|A|174
4V9C|1|AA|C|175

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20