IL_4V9D_038

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4V9D|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_038 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0844

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4V9D|1|AA|U|684
4V9D|1|AA|G|685
4V9D|1|AA|U|686
4V9D|1|AA|A|687
4V9D|1|AA|G|688
*
4V9D|1|AA|C|699
4V9D|1|AA|G|700
4V9D|1|AA|U|701
4V9D|1|AA|A|702
4V9D|1|AA|G|703
4V9D|1|AA|A|704
4V9D|1|AA|G|705
4V9D|1|AA|A|706

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain CA

Large subunit ribosomal RNA; LSU rRNA