IL_4V9D_062

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

4V9D|1|AA|A|1257, 4V9D|1|AA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_062 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.2106

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4V9D|1|AA|G|1255
4V9D|1|AA|A|1256
4V9D|1|AA|A|1257
4V9D|1|AA|G|1258
*
4V9D|1|AA|C|1277
4V9D|1|AA|G|1278
4V9D|1|AA|G|1279
4V9D|1|AA|A|1280
4V9D|1|AA|C|1281
4V9D|1|AA|C|1282

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14