IL_4V9D_409

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAGG*CUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_409 not in the Motif Atlas

Homologous match to IL_7A0S_018

Geometric discrepancy: 0.1884

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

4V9D|1|CA|U|703
4V9D|1|CA|G|704
4V9D|1|CA|A|705
4V9D|1|CA|A|706
4V9D|1|CA|G|707
4V9D|1|CA|G|708
*
4V9D|1|CA|C|723
4V9D|1|CA|U|724
4V9D|1|CA|G|725
4V9D|1|CA|G|726
4V9D|1|CA|A|727
4V9D|1|CA|G|728

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2