IL_4V9H_155

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4V9H|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9H_155 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.1863

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V9H|1|BA|C|2129
4V9H|1|BA|U|2130
4V9H|1|BA|G|2131
4V9H|1|BA|U|2132
4V9H|1|BA|G|2133
4V9H|1|BA|A|2134
4V9H|1|BA|A|2135
4V9H|1|BA|C|2136
*
4V9H|1|BA|G|2155
4V9H|1|BA|G|2156
4V9H|1|BA|G|2157
4V9H|1|BA|A|2158
4V9H|1|BA|G|2159

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain BC

50S ribosomal protein L1