IL_4V9I_032
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 4V9I|1|AA|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_032 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.1134
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4V9I|1|AA|G|683
4V9I|1|AA|A|684
4V9I|1|AA|G|685
4V9I|1|AA|U|686
4V9I|1|AA|A|687
4V9I|1|AA|G|688
*
4V9I|1|AA|C|699
4V9I|1|AA|G|700
4V9I|1|AA|C|701
4V9I|1|AA|A|702
4V9I|1|AA|G|703
4V9I|1|AA|A|704
4V9I|1|AA|U|705
4V9I|1|AA|A|706
4V9I|1|AA|C|707
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AK
- 30S Ribosomal protein S11
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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