IL_4V9I_045

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4V9I|1|AA|C|1200, 4V9I|1|AA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_045 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.0817

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V9I|1|AA|G|1057
4V9I|1|AA|G|1058
*
4V9I|1|AA|U|1199
4V9I|1|AA|C|1200
4V9I|1|AA|A|1201
4V9I|1|AA|G|1202
4V9I|1|AA|C|1203

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S Ribosomal protein S3

Chain AJ

30S Ribosomal protein S10

Chain AN

30S Ribosomal protein S14

Chain AY

A-SITE tRNA