IL_4V9I_054

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V9I|1|AA|C|1400, 4V9I|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_054 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.1136

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4V9I|1|AA|C|1399
4V9I|1|AA|C|1400
4V9I|1|AA|G|1401
*
4V9I|1|AA|C|1501
4V9I|1|AA|A|1502
4V9I|1|AA|A|1503
4V9I|1|AA|G|1504

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AE

30S Ribosomal protein S5

Chain AV

Transfer RNA; tRNA

Chain AX

mRNA