3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GAAC*GAGUGAAAUAGAGC
Length
18 nucleotides
Bulged bases
4V9I|1|BA|U|528, 4V9I|1|BA|G|532
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9I_077 not in the Motif Atlas
Homologous match to IL_7RQB_014
Geometric discrepancy: 0.0547
The information below is about IL_7RQB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60992.6
Basepair signature
cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
Number of instances in this motif group
6

Unit IDs

4V9I|1|BA|G|506
4V9I|1|BA|A|507
4V9I|1|BA|A|508
4V9I|1|BA|C|509
*
4V9I|1|BA|G|520
4V9I|1|BA|A|521
4V9I|1|BA|G|522
4V9I|1|BA|U|523
4V9I|1|BA|G|524
4V9I|1|BA|A|525
4V9I|1|BA|A|526
4V9I|1|BA|A|527
4V9I|1|BA|U|528
4V9I|1|BA|A|529
4V9I|1|BA|G|530
4V9I|1|BA|A|531
4V9I|1|BA|G|532
4V9I|1|BA|C|533

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BW
50S ribosomal protein L22
Chain BY
50S ribosomal protein L24

Coloring options:


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