IL_4V9I_077
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 4V9I|1|BA|U|528, 4V9I|1|BA|G|532
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_077 not in the Motif Atlas
- Homologous match to IL_7RQB_014
- Geometric discrepancy: 0.0547
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V9I|1|BA|G|506
4V9I|1|BA|A|507
4V9I|1|BA|A|508
4V9I|1|BA|C|509
*
4V9I|1|BA|G|520
4V9I|1|BA|A|521
4V9I|1|BA|G|522
4V9I|1|BA|U|523
4V9I|1|BA|G|524
4V9I|1|BA|A|525
4V9I|1|BA|A|526
4V9I|1|BA|A|527
4V9I|1|BA|U|528
4V9I|1|BA|A|529
4V9I|1|BA|G|530
4V9I|1|BA|A|531
4V9I|1|BA|G|532
4V9I|1|BA|C|533
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BW
- 50S ribosomal protein L22
- Chain BY
- 50S ribosomal protein L24
Coloring options: