IL_4V9I_108

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V9I|1|BA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_108 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1094

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4V9I|1|BA|C|1252
4V9I|1|BA|G|1253
4V9I|1|BA|A|1254
4V9I|1|BA|U|1255
4V9I|1|BA|G|1256
4V9I|1|BA|A|1257
4V9I|1|BA|A|1258
4V9I|1|BA|G|1259
*
4V9I|1|BA|U|1279
4V9I|1|BA|G|1280
4V9I|1|BA|G|1281
4V9I|1|BA|A|1282
4V9I|1|BA|G|1283

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L20