IL_4V9I_116

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_116 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0947

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4V9I|1|BA|C|1462
4V9I|1|BA|G|1463
4V9I|1|BA|A|1464
4V9I|1|BA|U|1465
4V9I|1|BA|G|1466
*
4V9I|1|BA|C|1623
4V9I|1|BA|U|1624
4V9I|1|BA|A|1625
4V9I|1|BA|A|1626
4V9I|1|BA|G|1627

Current chains

Chain BA

23S ribosomal RNA

Nearby chains